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Hood, W.G., Blauvelt, K., Bottom, D.L., Castro, J.M., Johnson, G.E., Jones, K.K., Krueger, K.L., Thom, R.M., Wilson, A., 2021. Using landscape ecology principles to prioritize habitat restoration projects across the Columbia River Estuary. Restoration Ecology. https://doi.org/10.1111/rec.13519
Mettler, A.J., Chiotti, J.A., Briggs, A.S., Boase, J.C., DeBruyne, R.L., Roseman, E.F. and Drouin, R., 2022. Identifying and characterizing juvenile lake sturgeon (Acipenser fulvescens, Rafinesque, 1817) occupancy hot spots within the St. Clair‐Detroit River System. Journal of Applied Ichthyology.
Wang, C.J., Hudson, J.M., Lassalle, G. and Whitesel, T.A., 2021. Impacts of a changing climate on native lamprey species: from physiology to ecosystem services. Journal of Great Lakes Research. https://doi.org/10.1016/j.jglr.2021.06.013
Wohl E, Castro J, Cluer B, Merritts D, Powers P, Staab B and Thorne C. 2021. Rediscovering, Reevaluating,and Restoring Lost River-Wetland Corridors. Front. Earth Sci. 9:653623
Harris, J. E. 2020. Assessing accuracy and bias of protocols to estimate age of Pacific salmon using scales. North American Journal of Fisheries Management 40:1007-1022.
Harris JE, GS Silver, JC Jolley, RD Nelle, and TA Whitesel. 2020. A stepwise approach to assess the occupancy state of larval lampreys in streams. Journal of Fish and Wildlife Management 11(1):226-237
Harris, J.E., J.J. Skalicky, T.L. Liedtke, L.K. Weiland, B.J. Clemens, and A.E. Gray. 2020. Effects of dewatering on behavior, distribution, and abundance of larval lampreys. River Research and Applications 36:2001
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Lucas, M.C., Hume, J.B., Almeida, P.R., Aronsuu, K., Habit, E., Silva, S., Wang, C.J. and Zampatti, B., 2020. Emerging conservation initiatives for lampreys: Research challenges and opportunities. Journal of Great Lakes Research. https://doi.org/10.1016/j.jglr.2020.06.004
Wang, C. J.,H. A. Schaller, K. C. Coates, M. C. Hayes and R. K. Rose. 2020. Climate change vulnerability assessment for Pacific Lamprey in rivers of the Western United States. Journal of Freshwater Ecology. 35(1): 29-55
Castro, J.M. and C.R. Thorne. 2019. The stream evolution triangle: Integrating geology, hydrology, and biology. River Research and Applications. https://doi.org/10.1002/rra.3421
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Johnson M F, Thorne C R, Castro, J.M., G.M. Kondolf, C.S. Mazzacano, S.B. Rood, and C. Westbrook. 2019. Biomic river restoration: a new focus for river management. River Research and Applications, 36: 3-12.
Spice, E.K., T. A. Whitesel, G.S. Silver, and MF Docker. 2019. Contemporary and historical river connectivity influence population structure in western brook lamprey in the Columbia River Basin. Conservation Genetics. 20:299-314 https://doi.org/10.1007/s10592-018-1137-9
Harris, J.E., C. Newlon, P.J. Howell, R.C. Koch, and S.L. Haeseker. 2018. Modeling individual variability in growth of bull trout in the Walla Walla River Basin using a hierarchical von Bertalanffy growth model. Ecology of Freshwater Fish 27(1):103-115
Runde, B.J., J.E. Harris, and J.A. Buckel. 2018. Symposium review: using electronic tags to estimate vital rates in fishes. Fisheries 43(6):268-270
Simpson WG. 2018. The entrainment and screening of returning and postspawning adult salmonids at irrigation canals of the Umatilla River, Oregon. Journal of Fish and Wildlife Management 9(1):285-295; e1944-687X
Allard, D. J., T. A. Whitesel, S. C. Lohr and M. L. Koski. 2017. Western Pearlshell Mussel Life History in Merrill Creek, Oregon: Reproductive Timing, Growth, and Movement. Northwest Science, 91(1):1-14.
Brignon W.R. 2017. Spatial and temporal segregation of wild and hatchery winter steelhead populations in Eagle Creek, Oregon. North American Journal of Fisheries Management 37:3
Brignon W.R., J.T. Peterson, J.B. Dunham, H.A. Schaller and C.B. Schreck. 2017. Evaluating trade-offs in bull trout reintroduction strategies using structured decision making. Canadian Journal of Fisheries and Aquatic Sciences. 75(2): 293-307
Brignon W.R., Martin M. Pike, Lars O. E. Ebbesson, Howard A. Schaller, James T. Peterson, Carl B. Schreck. 2017. Rearing environment influences boldness and prey acquisition behavior, and brain and lens development of bull trout. Environmental Biology of Fishes. 101(3): 383-401
Harris, J.E. and J.C. Jolley. 2017. Estimation of occupancy, density, and abundance of larval lampreys in tributary river mouths upstream of dams on the Columbia River, Washington and Oregon. Canadian Journal of Fisheries and Aquatic Sciences 74(6):843-852
Hightower, J.E., and J.E. Harris. 2017. Estimating fish mortality rates using telemetry and multistate models. Fisheries 42(4):210-219
Jolley, J.C., G.S. Silver, J.E. Harris, and T.A. Whitesel. 2017. Pacific lamprey recolonization of a Pacific Northwest river following dam removal. River Research and Applications. 34:44-51.
Jolley, J.C., C.T. Uh, G.S. Silver, and T.A. Whitesel. 2017. Low Mortality of Larval Lampreys from Electrofishing, Suction-pumping, Anesthesia, and Handling. Journal of Fish and Wildlife Management. 8:2 640-647
Silver, B.P., J.M. Hudson, S.C. Lohr and T.A. Whitesel. 2017. Short-term response of a coastal wetland fish assemblage to tidal regime restoration in Oregon. Journal of Fish and Wildlife Management 8(1): 193-208
Silver, B.P., J.M. Hudson, C.T. Smith, K.J. Lujan, M. Brown and T.A. Whitesel. 2017. An urban stream can support a healthy population of coastal cutthroat trout. Urban Ecosystems. 21(2): 291-304
Allen, M. B., R.O. Engle, J.S. Zendt, F.C. Shrier, J. T. Wilson, and P. J. Connolly. 2016. Salmon and Steelhead in the White Salmon River after the Removal of Condit Dam-Planning Efforts and Recolonization Results. Fisheries 41:4, 190-203
Brignon W.R. 2016. Linking Moral Obligations, Assumption-based Research, and Structured Decision Making to Inform Bull Trout Recovery. PhD dissertation. Oregon State University, Corvallis, Oregon USA
Docker, M. F., G. S. Silver, J. C. Jolley, and E. K. Spice. 2016. Simple Genetic Assay Distinguishes Lamprey Genera Entosphenus and Lampetra: Comparison with Existing Genetic and Morphological Identification Methods. North American Journal of Fisheries Management 36(4):780-787
Harris, J.E., J.C. Jolley, G.S. Silver, H. Yuen and T.A. Whitesel. 2016. An Experimental Evaluation of Electrofishing Catchability and Catch Depletion Abundance Estimates of Larval Lampreys in a Wadeable Stream: Use of a Hierarchical Approach. Transactions of the American Fisheries Society, 145:5, 1006-1017
Jolley, J.C., G. Kovalchuk, and M.F. Docker. 2016. River Lamprey (Lampetra ayresii) Outmigrant Upstream of the John Day Dam in the Mid-Columbia River. Northwestern Naturalist 97(1): 48-52
Simpson, WG, DP Peterson, K Steinke. 2016. Effect of waveform and voltage gradient on the survival of electroshocked steelhead embryos and larvae. North American Journal of Fisheries Management 36: 1149-1155.
Dawson, H.A., B.R. Quintella, P.R. Almeida, A.J. Treble, and J.C. Jolley. 2015. The ecology of larval and metamorphosing lampreys. Pages 75-137 in M.F. Docker, editor. Lampreys: biology, conservation and control, volume 1. Springer Science, New York.
Jolley, J.C., C.T. Uh, G.S. Silver. 2015. Feeding and growth of larval Pacific lamprey reared in captivity. North American Journal of Aquaculture 77(4): 449-459
Jolley, J.C., M.C. Satter, G.S. Silver and T.A. Whitesel. 2015. Evaluation of Methods to Measure Condition in Pacific Northwest Larval Lampreys. Northwest Science, 89(3):270-279
Silver, G.S. 2015. Investigations of larval Pacific lamprey Entosphenus tridentatus osmotic stress tolerance and occurrence in a tidally-influenced estuarine stream. Master's thesis, Portland State University, Portland
Wang, C., and H. Schaller. 2015. Conserving Pacific Lamprey through Collaborative Efforts, Fisheries. 40:2, 72-79
Hand, D.M., W.R. Brignon, and D.E. Olson. 2014. Adult Recovery of Hatchery Spring Chinook Salmon Adipose Fin-clipped and Coded-Wire-Tagged Using an Automated and Manual Marking Trailer. North American Journal of Aquaculture 76: 364-368
Hudson, J.M., M. Kavanagh, S. Castle & B. Silver. 2014. Lack of Effect on Embryo Mortality and Fry Growth from Adult Coho Salmon Subjected to Electronarcosis Prior to Spawning. North American Journal of Aquaculture, 76:346-350
Kavanagh, M. & D. E. Olson. 2014. The Effects of Rearing Density on Growth, Fin Erosion,Survival, and Migration Behavior of Hatchery Winter Steelhead. North American Journal of Aquaculture, 76:4 323-332
Schaller, H.A., C.E. Petrosky, and E.S. Tinus. 2014. Evaluating river management during seaward migration to recover Columbia River stream-type Chinook salmon considering the variation in marine conditions. Can. J. Fish. Aquat. Sci. 71(2) 259-271
Smith, Christian T., R. French, J. Lovtang, and D. Hand. 2014. Genetic Composition of the Warm Springs River Chinook Salmon Population Maintained following Eight Generations of Hatchery Production. Transactions of the American Fisheries Society 143: 1280-1294
Hayes, M.C. R. Hays, S.P. Rubin, D.M. Chase, M. Hallock, C. Cook-Tabor, C.W. Luzier, and M.L. Moser. 2013. Distribution of Pacific Lamprey Entophenus tridentatus in Watersheds of Puget Sound Based on Smolt Monitoring Data. Northwest Science 87: 95-105
Kurath G., J. C. Jolley, T. M. Thompson, D. Thompson, T. A. Whitesel, S. Gutenberger, and J. R. Winton. 2013. Ammocoetes of Pacific Lamprey Are Not Susceptible to Common Fish Rhabdoviruses of the U.S. Pacific Northwest. Journal of Aquatic Animal Health 25:274-280
Olson, D. and M. Paiya. 2013. An Evaluation of Rearing Densities to Improve Growth and Survival of Hatchery Spring Chinook Salmon. Journal of Fish and Wildlife Management 4(1):114-123;e1944-687X.
Brignon W.R., D.E. Olson , M.H. Peters and S.K. Gutenberger. 2012. Baffled and Standard Raceways: A Comparison of Juvenile Spring Chinook Salmon Performance and Smolt-to-Adult Survival. North American Journal of Aquaculture, 74:3, 314-319
Brignon W.R., M.B., D.E. Olson, H.A. Schaller and C.B. Schreck. 2012. Factors influencing density, distribution, and mesohabitat selection of juvenile wild salmonids and residual hatchery winter steelhead. Aquaculture 362:137-147
DeHaan P.W., P. D. Scheerer, R. Rhew & W. R. Ardren 2012. Analyses of Genetic Variation in Populations of Oregon Chub, a Threatened Floodplain Minnow in a Highly Altered Environment. Transactions of the American Fisheries Society, 141:2, 533-549
Haeseker S.L., J.A. McCann, J. Tuomikoski and B. Chockley 2012. Assessing Freshwater and Marine Environmental Influences on Life-Stage-Specific Survival Rates of Snake River Spring-Summer Chinook Salmon and Steelhead. Transactions of the American Fisheries Society, 141:1, 121-138
Howell, P.J. and P.M. Sankovich. 2012. An Evaluation of Redd Counts as a Measure of Bull Trout Population Size and Trend. North American Journal of Fisheries Management 32:1, 1-13
Jolley, J.C., G.S. Silver, and T.A. Whitesel. 2012. Occupancy and Detection of Larval Pacific Lampreys and Lampetra spp. in a Large River: the Lower Willamette River. Transactions of the American Fisheries Society 141:2, 305-312
Poirier, J.M., T.A. Whitesel, and J.R. Johnson. 2012. Chum salmon spawning activity in tributaries below Bonneville Dam: The relationship with tailwater elevation and season precipitation. River Research and Application 28:882-892
Simpson, WG, KG Ostrand. 2012. Effects of entrainment and bypass at screened irrigation canals on juvenile steelhead. Transactions of the American Fisheries Society 141: 599-609.
Starcevich S.J., P.J. Howell, S.E. Jacobs, P.M. Sankovich. 2012. Seasonal Movement and Distribution of Fluvial Adult Bull Trout in Selected Watersheds in the Mid-Columbia River and Snake River Basins. PLoS ONE 7(5): e37257
Baumsteiger, J., D. M. Hand, D. E. Olson, R. Spateholts, G. FitzGerald, and W. R. Ardren. Use of parentage analysis to determine reproductive success of hatchery-origin spring Chinook salmon outplanted into Shitike Creek, Oregon. North American Journal of Fisheries Management 28:1472-1485
Brignon W.R., M.B. Davis M.B., D.E. Olson, H.A. Schaller and C.B. Schreck. 2011. Snorkelers’ in-water observations can alter salmonid behavior. Journal of Fish and Wildlife Management. 2(1):90-98; e1944-687X.
Hudson, J.M., J.R. Johnson, and B. Kynard. 2011. A portable electronarcosis system for anesthetizing salmonids and other fish. North American Journal of Fisheries Management 31:335-339
Smith, Christian T. and Engle, Rod. 2011. Persistent Reproductive Isolation between Sympatric Lineages of Fall Chinook Salmon in White Salmon River, Washington. Transactions of the American Fisheries Society, 140: 3, 699-715
Spice E.K., T.A. Whitesel, C.T. McFarlane, and M.F. Docker. 2011. Characterization of 12 microsatellite loci for the Pacific lamprey, Entosphenus tridentatus (Petromyzontidae), and cross-amplification in five other lamprey species. Genetics and Molecular Research 10 (4): 3246-3250
Clarke, L.R., M.W. Flesher, T.A. Whitesel, G.R. Vonderohe, and R.W. Carmichael. 2010. Postrelease Performance of Acclimated and Directly Released Hatchery Summer Steelhead into Oregon Tributaries of the Snake River. North American Journal of Fisheries Management 30: 1098-1109
Hand, D.M., W.R.Brignon, D.E. Olson, and J. Rivera. 2010. Comparing Two Methods Used to Mark Juvenile Chinook Salmon: Automated and Manual Marking. North American Journal of Aquaculture 72: 10-17
Johnson, J.R., J. Baumsteiger, J. Zydlewski, J.M. Hudson, and W. Ardren. 2010. Evidence of panmixia between sympatric life history forms of coastal cutthroat trout in two lower Columbia River tributaries. North American Journal of Fisheries Management 30:691-701
Petrosky, C. E. and H. A Schaller. 2010. Influence of river conditions during seaward migration and ocean conditions on survival rates of Snake River Chinook salmon and steelhead. Ecology of Freshwater Fish, 19:520-536
Hatten, J., K. Tiffan, D. Anglin, S. Haeseker, J. Skalicky, and H. Schaller. 2009. A Spatial Model to Assess the Effects of Hydropower Operations on Columbia River Fall Chinook Salmon Spawning Habitat. North American Journal of Fisheries Management 29:1379-1405, 2009
Howell, P.J., J.B. Dunham, and P.M. Sankovich. 2009. Relationships between water temperatures and upstream migration, cold water refuge use, and spawning of adult bull trout from the Lostine River, Oregon, USA. Ecology of Freshwater Fish 2010: 19: 96-106
Luzier, C.W., M.F. Docker and T.A. Whitesel. 2009. Characterization of ten microsatellite loci for western brook lamprey Lampetra richardsoni. Conservation Genetics Resources 10.1007/s12686-009-9155-z
Silver, G.S., C.W. Luzier, and T.A. Whitesel. 2009. Detection and Longevity of Uncured and Cured Visible Implant Elastomer Tags in Larval Pacific Lampreys. North American Journal of Fisheries Management 29:1496-1501
Simpson, WG, BM Kennedy, KG Ostrand. 2009. Seasonal foraging and piscivory by sympatric wild and hatchery-reared steelhead from an integrated hatchery program. Environmental Biology of Fishes 86: 473-482.
Wilson, P. H., H.A. Schaller, C.E. Petrosky, and J. Loomis. 2009. Judging Cost-Effectiveness of Management of Snake River Salmon: Response to Halsing and Moore. Conservation Biology 23: 475-478
Finn, V., D. Young, T. Cummings, and J.M. Hudson. 2008. U.S. Fish and Wildlife Service's Coastal Cutthroat Trout Conservation Activities and Vision. Pages 133-134 in P. J. Connolly, T. H. Williams, and R. E. Gresswell, editors. The 2005 coastal cutthroat trout symposium: status, management, biology, and conservation. Oregon Chapter, American Fisheries Society, Portland
McGree, M., T. Whitesel, and J. Stone. 2008. Larval Metamorphosis of Individual Pacific Lampreys Reared in Captivity. Transactions of the American Fisheries Society 137:1866-1878
Budy, P. and H. Schaller. 2007. Evaluating Tributary Restoration Potential for Pacific Salmon Recovery. Ecological Applications, 17(4), pp. 1068-1086
Rhew, R. 2007. Redband Trout and the Endangered Species Act. Pages 123-126 in R.K. Schroeder and J.D. Hall, editors. Redband Trout: Resilience and Challenge in a Changing Landscape, Oregon Chapter, American Fisheries Society, 2007
Schaller H. and C. Petrosky. 2007. Assessing Hydrosystem Influence on Delayed Mortality of Snake River Stream-Type Chinook Salmon. North American Journal of Fisheries Management 27:810-824
Stone J. 2006. Observations on Nest Characteristics, Spawning Habitat, and Spawning Behavior of Pacific and Western Brook Lamprey in a Washington Stream. Northwestern Naturalist 87:225-232
Al-Chokhachy, R., P. Budy, and H. Schaller. 2005. Understanding the Significance of Redd Counts: a Comparison between Two Methods for Estimating the Abundance of and Monitoring Bull Trout Populations. North American Journal of Fisheries Management 25:1505-1512
Tiffan K.F., D.W. Rondorf, and J.J. Skalicky. 2005. Diel Spawning of Chum Salmon in the Columbia River. Transactions of the American Fisheries Society 2005;134:892-900
Yuen, H and R. Sharma. 2005. Using simulation techniques to estimate management parameters on Snake River steelhead: Declines in productivity make rebuilding difficult North American Journal of Fisheries Management 25: 446-463
Hand, D.M. and D.E. Olson. 2004. Creating a Sanctuary for Wild Steelhead Trout Through Hatchery Operations. Published as part of the proceedings of the Wild Trout VIII Symposium, Yellowstone National Park
McHugh, P., P. Budy, and H. Schaller. 2004. A Model-Based Assessment of the Potential Response of Snake River Spring-Summer Chinook Salmon to Habitat Improvements. Transactions of the American Fisheries Society 133:622-638
Olson, D.E., B. Spateholts, M. Paiya, and D.E. Campton. 2004. Salmon hatcheries for the 21st century: A model at Warm Springs National Fish Hatchery. Pages 585-602 in M.J. Nickum, P.M. Mazik, J.G. Nickum, and D.D. MacKinlay, editors. Propagated fish in resource management. American Fisheries Society, Symposium 44, Bethesda, Maryland
Pastor, S.M. 2004. An evaluation of fresh water recoveries of fish released from national fish hatcheries in the Columbia River basin, and observations of straying. Pages 87-98 in M.J. Nickum, P.M. Mazik, J.G. Nickum, and D.D. MacKinlay, editors. Propagated fish in resource management. American Fisheries Society, Symposium 44, Bethesda, Maryland
Stone, J., S. Barndt and M. Gangloff. 2004. Spatial distribution and habitat use of the western pearlshell mussel (Margaritifera falcata) in a western Washington stream. Journal of Freshwater Ecology 19(3): 341-352
Tiffan K.F., D.W. Rondorf, and J.J. Skalicky. 2004. Imaging Fall Chinook Salmon Redds in the Columbia River with a Dual-Frequency Identification Sonar. North American Journal of Fisheries Management 24:1421-1426
Barndt S., J. Stone. 2003. Infestation of Salmincola californiensis (Copepoda: Lernaeopodidae) in Wild Coho Salmon, Steelhead, and Coastal Cutthroat Trout Juveniles in a Small Columbia River Tributary. Transactions of the American Fisheries Society 132:1027-1032
Wilson, P. H. 2003. Using Population Projection Matrices to Evaluate Recovery Strategies for Snake River Spring and Summer Chinook Salmon. Conservation Biology 17: 782-794
Budy, P., G.P. Thiede, N. Bouwes, C.E. Petrosky, and H. Schaller. 2002. Evidence Linking Delayed Mortality of Snake River Salmon to Their Earlier Hydrosystem Experience. North American Journal of Fisheries Management 22:35-51
Olson, D.and B. Spateholts. 2001. Hatcheries, Harvest and Wild Fish: An Integrated Program at Warm Springs National Fish Hatchery, Oregon. Pages 23-42 in the Proceedings of the 52nd Annual Pacific Northwest Fish Culture Conference, hosted by the Oregon Department of Fish and Wildlife, Portland, Oregon
Petrosky, C.E., H.A. Schaller, and P. Budy. 2001. Productivity and survival rate trends in the freshwater spawning and rearing stage of Snake River chinook salmon (Oncorhynchus tshawytscha). Can. J. Fish. Aquat. Sci. 58: 1196-1206
Lohr, S., T. Cummings, W. Fredenberg, and S. Duke. 2000. Listing and recovery planning for bull trout. Pages 80-87 in D. Schill, S. Moore, P. Byorth and B. Hamre, editors, Wild Trout VII, Management in the New Millennium: Are We Ready? Beyond Words, Fort Collins, Colorado
Schaller, H.A., C.E. Petrosky, and O.P. Langness. 2000. Reply to Zabel and Williams' comments on "Contrasting patterns of productivity and survival rates for stream-type chinook salmon (Onchorynchus tshawytscha) populations of the Snake and Columbia rivers" by Schaller et al. (1999). Can. J. Fish. Aquat. Sci. 57: 1742-1746
Schaller, H.A.,C.E. Petrosky, and O.P. Langness. 1999. Contrasting patterns of productivity and survival rates for stream- type chinook salmon (Onchorynchus tshawytscha) populations of the Snake and Columbia rivers. Can. J. Fish. Aquat. Sci. 56: 1031-1045