Genetic Monitoring for Managers



Adams, J.R., C. Lucash, L. Schutte, and L.P. Waits. 2007. Locating hybrid individuals in the red wolf (Canis rufus) experimental population area using a spatially targeted sampling strategy and faecal DNA genotyping. Molecular Ecology 16:1823-1834. [DOI: 10.1111/j.1365-294X.2007.03270.x] abstract - pdf

Adams, J., and L. Waits. 2007. An efficient method for screening faecal DNA genotypes and detecting new individuals and hybrids in the red wolf (Canis rufus) experimental population area. Conservation Genetics 8:123-131. [DOI: 10.1007/s10592-006-9154-5] abstract

Allendorf, F.W., P.R. England, G. Luikart, P.A. Ritchie, and N. Ryman. 2008. Genetic effects of harvest on wild animal populations. Trends in Ecology and Evolution 23:327-337. [DOI: 10.1016/j.tree.2008.02.008 ] abstract

Allendorf, F.W., and R.F. Leary. 1988. Conservation and distribution of genetic variation in a polytypic species, the cutthroat trout. Conservation Biology 2: 170-184.

Allendorf, F.W., R.F. Leary, N.P. Hitt, K.L. Knudsen, L.L. Lundquist, and P. Spruell. 2004. Intercrosses and the U.S. Endangered Species Act: should hybridized populations be included as westslope cutthroat trout? Conservation Biology 18:1203-1213. [DOI: 10.1111/j.1523-1739.2004.00305.x ] abstract - pdf

Allendorf, F. W., Leary, R. F., Spruell, P. & Wenburg, J. K. 2001. The problems with hybrids: setting conservation guidelines. Trends in Ecololgy and Evolution. 16:613-622.

Allendorf, F.W. and N. Ryman. 1987. Genetic management of hatchery stocks. In Population Genetics and Fishery Management (Ryman, N. et al., eds), pp. 141-159, University of Washington Press. [DOI: ][ISBN-10: 0295964367 ; ISBN-13: 978-0295964362]

Amos, W., and A.R. Hoelzel. 1991. Long-term preservation of whale skin for DNA analysis. Report of the International Whaling Commission (Special Issue 13):99-104. [A. R. Hoelzel (ed.). International Whaling Commission, Cambridge. 1991. .Special issue 13: Genetic Ecology of Whales and Dolphins. 311pp [ISBN: 0 906975 25 5] Report Summary

Anonymous. 1999. Status review for westslope cutthroat trout in the United States. U.S. Fish and Wildlife Service, Regions 1 and 6, Portland, Oregon, and Denver, Colorado.

Araki, H. W.R. Ardren, E. Olsen, B. Cooper, and M.S. Blouin. 2007. Reproductive success of captive-bred steelhead trout in the wild: evaluation of three hatchery programs in the Hood River. Conservation Biology 21: 181-190. [DOI: 10.1111/j.1523-1739.2006.00564.x] abstract

Avise, J. 2004. Molecular Markers, Natural History and Evolution, Second edition. Sinauer. [ISBN: 0-87893-041-8] about

Bailey, L.L., T.R. Simons, and K.H. Pollock. 2004. Estimating site occupancy and species detection probability parameters for terrestrial salamanders. Ecological Applications 14:692-702. [DOI: 10.1890/03-5012] abstract - pdf

Baker, C.S. 2008. A truer measure of the market: the molecular ecology of fisheries and wildlife trade. Molecular Ecology 17:3985-3998. [DOI: 10.1111/j.1365-294X.2008.03867.x] abstract - pdf

Baker, C.S., J.G. Cooke, S. Lavery, M.L. Dalebout, Y.-U. Ma, N. Funahashi, C. Carraher and R.L. Brownell. 2007. Estimating the number of whales entering trade using DNA profiling and capture-recapture analysis of market products. Molecular Ecology 16:2617-2626. [DOI: 10.1111/j.1365-294X.2007.03317.x ] abstract - pdf

Barrett, L.G., T. He, B.B. Lamont, and S.L. Krauss. 2005. Temporal patterns of genetic variation across a 9-year-old aerial seed bank of the shrub Banksia hookeriana (Proteaceae). Molecular Ecology 14: 4169–4179. [DOI: 10.1111/j.1365-294X.2005.02726.x] abstract

Beacham, T.D. , M. Wetklo, C. Wallace, J.B. Olsen, B.G. Flannery, J.K. Wenburg, W.D. Templin, A. Antonovich, L.W. Seeb. 2008. The application of microsatellites for stock identification of Yukon River Chinook salmon. North American Journal of Fisheries Management 28:283-295.

Beier, P., M.R. Vaughan, M.J. Conroy, and H. Quigley. 2006. Comments and
communications received by the Scientific Review Team during its review of
literature related to the Florida panther. Final Report. Florida Fish and Wildlife
Conservation Commission, Tallahassee, Florida, USA.

Beissinger, S.R., and M.Z. Peery. 2007. Reconstructing the historical demography of an endangered seabird. Ecology. 88:296-305.

Beja-Pereira, R. Oliveria, P.C. Alves, M.K. Schwartz, and G. Luikart. 2009. Advancing ecological understandings through technological transformations in noninvasive genetics. Molecular Ecology Resources 9:1279-1301. [DOI: 10.1111/j.1755-0998.2009.02699.x] abstract - pdf (alt pdf)

Belkhir, K., P. Borsa, L. Chikhi, N. Rafaste, and F. Bonhomme. 2004. GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier (France). Accessed 11 Apr 2007.

Bellemain, E., J. E. Swenson, D. Tallmon, S. Brunberg, and P. Taberlet. 2005. Estimating population size of elusive animals with DNA from hunter-collected feces: Four methods for brown bears. Conservation Biology 19:150-161.

Birungi, J., M.S. Roy and P. Arctander. 1998. DMSO-preserved samples as a source of mRNA for RT-PCR. Molecular Ecology 7:1429-1430. [DOI: 10.1111/j.1365-294X.1998.00460.x ] (Technical Note: no abstract)

Boitani, L. 2003. Wolf conservation and recovery. Wolves. Behavior, Ecology, and Conservation (eds L.D. Mech& L. Boitani), pp. 317–340. The University of Chicago Press, Chicago. [ISBN: 0226516962, 9780226516967] U Chicago Press Summary

Boulanger, J. and B. McLellan. 2001. Closure violation in DNA-based mark-recapture estimation of grizzly bear populations. Canadian Journal of Zoology 79: 642–651. [DOI: 10.1139/cjz-79-4-642] abstract - corrigendum

Boulanger, J., S. Himmer, and C. Swan. 2004. Monitoring of grizzly bear population trends and demography using DNA mark-recapture methods in the Owikeno Lake area of British Columbia. Canadian Journal of Zoololgy 82: 1267-1277. [DOI: 10.1139/z04-100] abstract

Burnham, K. P., and D. R. Anderson. 2002. Model selection and multimodel inference: a practical information-theoretic approach. Springer-Verlag, New York, New York, USA. [ISBN: 978-0-387-95364-9] about

Bricker, B.J., and D.R. Ewalt. 2005. Evaluation of the HOOF-Print assay for typing Brucella abortus strains isolated from cattle in the United States: results with four performance criteria. BMC Microbiology 5:37. [DOI: 10.1186/1471-2180-5-37] abstract - pdf

Briones, V., L. de Juan, C. Sánchez, A. Vela, M. Galka, N. Montero, J. Goyache, A. Aranaz, A. Mateos, and L. Domínguez. 2000. Bovine tuberculosis and the endangered Iberian lynx. Emerging Infectious Diseases 6:189-191.[DOI: unknown] abstract - pdf

Clarke S.C., J.E. Magnussen, D.L. Abercrombie, M.K. McAllister, and M.S. Shivji. 2006. Identification of shark species composition and proportion in the Hong Kong shark fin market based on molecular genetics and trade records. Conservation Biology 20:201-211. [DOI: 10.1111/j.1523-1739.2005.00247.x] abstract

Conroy, M.J., P. Beier, H. Quigley, and M.R. Vaughn. 2006. Improving the use of science in conservation: lessons from the Florida panther. Journal of Wildlife Management 70:1-7. pdf

Coulon, A., J.W. Fitzpatrick, R. Bowman, B.M. Stith, C.A. Makarewich, L.M. Stenzler, and I.J. Lovette. 2008. Congruent population structure inferred from dispersal behaviour and intensive genetic surveys of the threatened Florida scrub-jay (Aphelocoma coerulescens). Molecular Ecology 17:1685-1701.

Cushman, S.A., K.S. McKelvey, J. Hayden, M.K. Schwartz. 2006. Gene flow
in complex landscapes: testing multiple hypotheses with causal modeling. American Naturalist 168:486-499.

Ellstrand, N.C., and D.R. Elam. 1993. Population genetic consequences of small population size: implications for plant conservation. Annual Review of Ecological Systems. 24:217-42. pdf

Ennis, S., and T. F. Gallagher. 1994. PCR based sex determination assay in cattle based on the bovine Amelogenin locus. Animal Genetics 25:425-427. [DOI: 10.1111/j.1365-2052.1994.tb00533.x ] abstract

Excoffier, L., P.E. Smouse, J.M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491. [DOI: unknown] abstract - pdf

Falush, D., M. Stephens and J.K. Pritchard. 2003. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics, 164:1567-1587. [DOI: unknown] abstract - pdf

Fernandez, N. M. Delibes, and F. Palomares. 2006. Landscape evaluation in conservation: molecular sampling and habitat modeling for the Iberian lynx. Ecological Applications 16:1037-1049. [DOI: 10.1890/1051-0761(2006)016[1037:LEICMS]2.0.CO;2 ] abstract - pdf

Fisher, M.C., B. Rannala, V. Chaturvedi and J.W. Taylor. 2002. Disease surveillance in recombining pathogens: Multilocus genotypes identify sources of human Coccidioides infections. Proceedings of the National Academy of Sciences USA 99:9067-9071. [DOI: 10.1073/pnas.132178099] abstract - pdf - figures only

Flagstad, Ø., E. Hedmark, A.Landa, H. Brøseth, J. Persson, R. Andersen, P. Segerstrőm, H. Ellegren. 2004. Colonization history and noninvasive monitoring of a reestablished wolverine population. Conservation Biology. 18: 676-688. [DOI: 10.1111/j.1523-1739.2004.00034.x] abstract

Foreyt, W. J. 1990. Pneumonia in bighorn sheep: effects of Pasteurella haemolytica from domestic sheep and effects on survival and long-term reproduction. Biennial Symposium of the North American Wild Sheep and Goat Council 7:92-101.

Frantz, A.C. and T.J. Roper. 2006. Simulations to assess the performance of different rarefaction methods in estimating population size using small datasets. Conservation Genetics 7: 315-318. [DOI: 10.1007/s10592-006-9125-x] no abstract - pdf

Glaubitz, J.C. 2004. CONVERT: A user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages.  Molecular Ecology Notes 4: 309 –310. [doi: 10.1111/j.1471-8286.2004.00597.x]

Guillot, G, F. Mortier, and A. Estoup. 2005. GENELAND: a program for landscape genetics. Molecular Ecology Notes 5:712-715.

Funk, W.C., M.S. Blouin, P.S. Corn, B.A. Maxell, D.S. Pilliod, S. Amish, F.W. Allendorf. 2005. Population structure of Columbia spotted frogs (Rana luteiventris) is strongly affected by the landscape. Molecular Ecology 14:483-493. [DOI: 10.1111/j.1365-294X.2005.02426.x] abstract

Haig, S.M., T.D. Mullins, E.D. Forsman, P.W. Trail, and L. Wennerberg. 2004. Genetic identification of spotted owls, barred owls, and their hybrids: legal implications of hybrid identity. Conservation Biology 18:1347-1357.[DOI: 10.1111/j.1523-1739.2004.00206.x] abstract - pdf

Hedrick, P.W., D. Hedgecock, S. Hamelberg, S.J. Croci. 2000. The impact of supplementation in winterr-un Chinook salmon on effective population size. The Journal of Heredity 91: 112-116. [DOI: unknown] abstract - pdf

Herbert, P.D.N., E.H. Penton, J. Burns, D.J. Janzen and W. Hallwachs. 2004. Identification of birds through DNA barcodes. PLoS Biology 2:1657-1663. [DOI: 10.1371/journal.pbio.0020312] abstract - pdf

Hitt, N.P., C.A. Frissell, C.C. Muhlfeld, and F.W. Allendorf. 2003. Spread of hybridization between native westslope cutthroat trout, Oncorhynchus clarki lewisi, and nonnative rainbow trout, Oncorhynchus mykiss. Canadian Journal of Fisheries and Aquatic Sciences 60:1440-1451. [DOI: 10.1139/f03-125] abstract

Jeffreys, A.J., V. Wilson, and S.L. Thein. 1985a. Hypervariable 'minisatellite' regions in human DNA. Nature 314:67-73. [DOI: 10.1038/314067a0] abstract

Jeffreys, A. J., V. Wilson, and S.L. Thein. 1985b. Individual-specific 'fingerprints' of human DNA. Nature 316:76-79. [DOI: 10.1038/316076a0] abstract

Joly, D.O. and F. Messier. 2005. The effect of bovine tuberculosis and brucellosis on reproduction and survival of wood bison in Wood Buffalo National Park. Journal of Animal Ecology 74:543-551. [DOI:10.1111/j.1365-2656.2005.00953.x] abstract - pdf

Jorde, P.E., and N. Ryman. 1996. Demographic genetics of brown trout (Salmo trutta) and estimation of effective population size from temporal change of allele frequencies. Genetics 143:1369–1381. abstract

Karesh, W.B., F. Smith and H. Frazier-Taylor. 1987. A Remote Method for Obtaining Skin Biopsy Samples. Conservation Biology 1:261-262. [DOI: 10.1111/j.1523-1739.1987.tb00041.x] abstract

Kendall, K.C., J.B. Stetz, D.A. Roon, L.P. Waits, J.B. Boulanger, and D. Paetkau. 2008. Grizzly bear density in Glacier National Park, Montana. Journal of Wildlife Management 72:1693-1705. [DOI: 10.2193/2008-007] abstract

Kendall, K.C., J.B. Stetz, J.B. Boulanger, A.C. Macleod, D. Paetkau, and G.C. White. 2009. Demography and genetic structure of a recovering grizzly bear population. Journal of Wildlife Management 73:3-14. [DOI: 10.2193/2008-330] abstract

Kilpatrick, A.M., L.D. Kramer, M.J. Jones, P.P Marra, and P. Daszak. 2006. West Nile Virus epidemics in North America are driven by shifts in mosquito feeding behavior. PLoS Biology 4:606-610. [DOI: 10.1371/journal.pbio.0040082] abstract - pdf

Kilpatrick, A.M., L.D. Kramer, M.J. Jones, P.P. Marra, P. Daszak, and D.M. Fonseca. 2007. Genetic influences on mosquito feeding behavior and the emergence of zoonotic pathogens. American Journal of Tropical Medicine and Hygiene. 77:667-671.

Koenig, W.D., and E.L. Walters. 2008. A tale of two worlds: molecular ecology
and population structure of the threatened Florida scrub-jay. Molecular Ecology 17:1629-1871.

Kolar, C.S., D.C. Chapman, W.R. Courtenay Jr, C.M. Housel, J.D. Williams, D.P. Jennings. 2007. Bigheaded Carps: A Biological Synopsis and Environmental Risk Assessment. American Fisheries Society, Special Publication 33. Bethesda, Maryland. link

Krützen, M., L.M. Barré, L.M. Möller, M.R. Heithaus, C. Simmer, and W.B. Sherwin. 2002. A biopsy system for small cetaceans: darting success and wound healing in Tursiops spp. Marine Mammal Science 18:863-878. [DOI: 10.1111/j.1748-7692.2002.tb01078.x ] abstract

Laikre, L, L.C. Larsson, A. Palmé1, J. Charlier, M. Josefsson, and N. Ryman. 1998. Potentials for monitoring gene level biodiversity: using Sweden as an example. Biodiversity and Conservation 17:893-910. abstract

Leberg, P.L. 1992. Effects of a population bottleneck on genetic variation as measured by allozyme electrophoresis. Evolution 46: 477-494. [DOI: unknown] abstract - pdf

Leonard et al. 2005

Librado, P. and J. Rozas. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452 | doi: 10.1093/bioinformatics/btp187. [DOI: 10.1038/ng1847 ] abstract

Luikart, G., J.-M.Cornuet, F.W. Allendorf. 1999. Temporal changes in allele frequencies provide estimates of population bottleneck size. Conservation Biology 13: 523-530. [DOI: 10.1046/j.1523-1739.1999.98133.x] abstract

Luikart, G., P.R. England, D. Tallmon, S. Jordan, and P. Taberlet. 2003. The power and promise of population genomics: from genotyping to genome typing. Nature Reviews Genetics 4:981-994.

Luikart, G., K. Pilgrim, J. Visty, V.O. Ezenwa, and M.K. Schwartz. 2008. Candidate gene microsatellite variation is associated with parasitism in wild bighorn sheep. Biology Letters 4:228-231

Lukacs, P.M. and K.P. Burnham. 2005. Review of capture-recapture methods applicable to noninvasive genetic sampling. Molecular Ecology 14, 3909-3919. [DOI: 10.1111/j.1365-294X.2005.02717.x] abstract

Manel et al. 2003

Manley, P., W.J. Zielinski, M.D. Schlesinger, and S.R. Mori. 2004. Evaluation of a multiple-species approach to monitoring species at the ecoregional scale. Ecological Applications 14:296-310. [DOI: 10.1890/02-5249 ] abstract - pdf

Mantel, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Research 27:209-220. [DOI: unknown] abstract - pdf

Marucco, F., D.H. Pletscher, L. Boitani, M.K. Schwartz, K.L. Pilgrim, and J. Lebreton. 2009. Wolf survival and population trend using non-invasive capture–recapture techniques in the Western Alps. Journal of Applied Ecology. [DOI: 10.1111/j.1365-2664.2009.01696.x] abstract

McClintock, B.T., and G.C. White. 2007. Bighorn sheep abundance following a suspected pneumonia epidemic in Rocky Mountain National Park. Journal of Wildlife Management 71:183-189. abstract

McKelvey, K.S., and M.K. Schwartz. 2005. DROPOUT: a program to identify problem loci and samples for noninvasive genetic samples in a capture-mark-recapture framework. Molecular Ecology Notes 5:716-718. [DOI: 10.1111/j.1471-8286.2005.01038.x] abstract - pdf - software

McKelvey, K.S., J.von Kienast, K.B. Aubry, G.M. Koehler, B.T. Maletzke, J.R. Squires, E.L. Lindquist, S. Loch and M.K. Schwartz. 2006. DNA analysis of hair and scat collected along snow tracks to document the presence of Canada lynx (Lynx canadensis). Wildlife Society Bulletin 34:451-455. [DOI: 10.2193/0091-7648(2006)34[451:DAOHAS]2.0.CO;2] abstract

Milbury, C.A., D.W. Meritt, R.I.E. Newell, P.M. Gaffney. 2004. Mitochondrial DNA markers allow monitoring of oyster stock enhancement in the Chesapeake Bay. Marine Biology 2004: 351-359. [DOI: 10.1007/s00227-004-1312-z] abstract - pdf

Miller, C.R. et al. 2003. Pedigree-based assignment tests for reversing coyote (Canis latrans) introgression into the wild red wolf (Canis rufus) population. Molecular Ecology 12: 3287–3301. [DOI: 10.1046/j.1365-294X.2003.02003.x] abstract - pdf

Miller 2005

Mills, E.L., J.H. Leach, J.T. Carlton, and C.L. Secor. 1993. Exotic species in the great lakes-a history of biotic crisis and anthropogenic introductions. Journal of Great Lake Research 19:1-54.

Mills, L.S. 2002. False samples are not the same as blind controls. Nature 415:471. [DOI: 10.1038/415471a] abstract

Muhlfeld, C.C., S.T. Kalinowski, T.E. McMahon, M.L. Taper, S. Painter, R.F. Leary, and F.W. Allendorf. 2009. Hybridization rapidly reduces fitness of a native trout in the wild. Biology Letters 03/18/09 (doi:10.1098/rsbl.2009.0033). pdf

Murphy, M.A., K.C. Kendall, A. Robinson, and L.P. Waits. 2007. The impact of time and field conditions on brown bear (Ursus arctos) faecal DNA amplification. Conservation Genetics 8:1219-1224. [DOI: 10.1007/s10592-006-9264-0] abstract - pdf

Murphy, M.A., L.P. Waits, and K.C. Kendall. 2003. The influence of diet on faecal DNA amplification and sex identification in brown bear (Ursus arctos). Molecular Ecology 12:2261-2265. [DOI: 10.1046/j.1365-294X.2003.01863.x] abstract

Nakagawa et al. 2004

Norman, D. J., M. Zapata, D.W. Gabriel, Y.P. Duan, J.M.F. Yuen, A. Mangravita-Novo, and R.S. Donahoo. 2009. Genetic diversity and host range variation of Ralstonia solanacearum strains entering North America. Phytopathology 99:1070-1077.

Paetkau, D. 2003. An empirical exploration of data quality in DNA-based population inventories. Molecular Ecology 12:1375-1387. [DOI: 10.1046/j.1365-294X.2003.01820.x] abstract

Palm S., J. Dannewitz, T. Järvi, E. Petersson, T. Prestegaard, and N. Ryman. 2003. Lack of molecular genetic divergence between sea-ranched and wild sea trout (Salmo trutta). Molecular Ecology 12: 2057–2071. abstract

Peery, M. Z., S. R. Beissinger, R. F. House, M. Bérubé, L. A. Hall, A. Sellas, and P. J. Palsbøll. 2008. Characterizing source-sink dynamics with genetic parentage assignments. Ecology. 89: 2746-2759.

Perez, A.S., L. Mejia, M. Fegan, and C. Allen. 2008. Diversity and distribution of Ralstonia solanacearum strains in Guatemala and rare occurrence of tomato fruit infection. Plant pathology 57:320-331.

Pertoldi, C., V. Loeschcke, E. Randi, A.B. Madsen, M.M. Hansen, R. Bijlsma, L. Van De Zande. 2005. Present and past microsatellite variation and assessment of genetic structure in Eurasian badger (Meles meles) in Denmark. Journal of Zoology (London). 265: 387-394. [DOI: 10.1017/S0952836905006485] abstract

Piggott, M.P. et al. 2006. Estimating population size of endangered brush-tailed rock-wallaby (Petrogale penicillata) colonies using faecal DNA. Molecular Ecology 15: 81-91. [DOI: 10.1111/j.1365-294X.2005.02783.x ] abstract

Pimm, S.L., L. Dollar, adn O.L Bass. 2006. The genetic rescue of the Florida panther. Animal Conservation 9:115-122.

Poulsen, N.A., E.E. Nielsen, M.H. Schierup, V. Loeschcke, and P. Gronkjaer. 2006. Long-term stability and effective population size in North Sea and Baltic Sea cod (Gadus morhua). Molecular Ecology 15: 321-331. [DOI: 10.1111/j.1365-294X.2005.02777.x] abstract

Pradel, R. 1996. Utilization of capture-mark-recapture for the study of recruitment and population growth rate. [DOI: ] Biometrics 52:703-709. [DOI: unknown] abstract - pdf

Pranty, B. 1996. Distribution of the Florida scrub-jay, 1992-1993. Report on cooperative agreement #14-16-0004-91-950. US Fish and Wildlife Service, Jacksonville, Florida.

Price, A.L., N.J. Patterson, R.M. Plenge, M.E. Weinblatt, N.A. Shadick, D. Reich. 2006. Principal components analysis corrects for stratification in genome-wide association studies. Nature Genetics 38:904-909. [DOI: 10.1038/ng1847] abstract pdf

Pritchard, J.K., M. Stephens and P. J. Donnelly, 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959. [DOI: unknown ] abstract - pdf (alt pdf)

Proctor, M.F., B.N. Mclellan, C. Strobeck, and R.M.R. Barclay. 2005. Genetic analysis reveals demographic fragmentation of grizzly bears yielding vulnerably small populations. Proceedings of the Royal Society Biology B 272: 2409-2416. [DOI: 10.1098/rspb.2005.3246] abstract - pdf

Prugh, L.R, C.E. Ritland, S.M. Arthur, and C.J. Krebs. 2005. Monitoring coyote population dynamics by genotyping faeces. Molecular Ecology 14. 1585-1596. [DOI: 10.1111/j.1365-294X.2005.02533.x] abstract

Ramakrishnan, U., E.A. Hadley, and J.L. Mountain. 2005. Detecting past population bottlenecks using temporal genetic data. Molecular Ecology 14: 2915-2922. [DOI: 10.1111/j.1365-294X.2005.02586.x] abstract

Ramp, J.M. S.K. Collinge, and T.A. Ranker. 2006. Restoration genetics of the vernal pool endemic Lasthenia conjugens (Asteraceae). Conservation Genetics 7:631-649. [DOI: 10.1007/s10592-005-9052-2] abstract - pdf

Raymond, M., and Rousset F. 1995. An exact test for population differentiation. Evolution 49:1280-1283. [DOI: unknown] abstract - pdf (alt pdf)

Raymond, M., and Rousset F. 1995. Genepop (version 1.2), population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248-249. [DOI: unknown] no abstract pdf

Rousset, F., and Raymond M. 1995. Testing heterozygote excess and deficiency. Genetics 140:1413-1419.[DOI: unknown] abstract - pdf (alt pdf)

Roon, D.A., M.E. Thomas, K.C. Kendall, and L.P. Waits. 2005. Evaluating mixed samples as a source of error in non-invasive genetic studies using microsatellites. Molecular Ecology 14:195-201. [DOI: 10.1111/j.1365-294X.2004.02385.x] abstract

Roon, D.A., L.P. Waits, and K.C. Kendall. 2003. A quantitative evaluation of two methods for preserving hair samples. Molecular Ecology Notes 3:163-166. [DOI: 10.1046/j.1471-8286.2003.00358.x] abstract

Rudnick, J.A. et al. 2005. Using naturally shed feathers for individual identification, genetic parentage analysis, and population monitoring in an endangered Eastern imperial eagle (Aquila heliaca) population from Kazakhstan. Molecular Ecology. 14: 2959-2967. [DOI: 10.1111/j.1365-294X.2005.02641.x] abstract

Ryman, N., F. Utter, K. Hindar. 1995. Introgression, supportive breeding, and genetic conservation. In Population Management for Survival and Recovery (Ballou, J.D. et al., eds), pp. 341-365, Columbia University Press. [ISBN 10: 0231101775 ; ISBN 13: 9780231101776]

Sanchez, D.M., P.R. Krausman, T.R. Livingston, and P.S. Gipson. 2004. Persistence of carnivore scat in the Sonoran Desert. Wildlife Society Bulletin 32:366-372. [DOI: 10.2193/0091-7648(2004)32[366:POCSIT]2.0.CO;2] abstract

Schwartz, M.K., D.A. Tallmon, and G. Luikart. 1998. Using non-invasive genetic sampling methods and new analytical tools to detect population declines and minimize extinctions. Animal Conservation 1: 293-299.

Schwartz, M.K. et al. (2004) Hybridization between bobcats and Canada lynx. Conservation Genetics 5:349–355 [DOI: 10.1023/B:COGE.0000031141.47148.8b] abstract - pdf first page

Schwartz, M.K., G. Luikart, and R.S. Waples. 2007. Genetic monitoring as a promising tool for conservation and management. Trends in Ecology and Evolution 22:25-33. [DOI: 10.1016/j.tree.2006.08.009] abstract

Schneider, S., D. Roessli, L. Excoffier. 2000. ARLEQUIN, version 2.001: A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory. University of Geneva, Switzerland. website

Seal, U.S. 1991. Genetic conservation and management of the Florida panther (Felis concolor coryi). Report to the U.S. Fish and Wildlife Service. Conservation Breeding Specialist Group, SSC/IUCN, Apple Valley, Minnesota.

Selosse, M-A., D. Jacquot, D. Bouchard, F. Martin and F. Le Tacon. 1998. Temporal persistence and spatial distribution of an American inoculant strain of the ectomycorrhizal basidiomycete Laccaria bicolor in a French forest plantation. Molecular Ecology. 7: 561-573. [DOI: 10.1046/j.1365-294x.1998.00353.x] abstract

Sigg, D.P. 2006. Reduced genetic diversity and significant genetic differentiation after translocation: comparison of the remnant and translocated populations of bridled nailtail wallabies (Onychogalea fraenata). Conservation Genetics 7: 577-589. [DOI: 10.1007/s10592-005-9096-3] abstract - pdf

Smouse, P.E., J.C. Long, R.R.Sokal. 1986. Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Systematic Zoology 35: 627-632. [DOI: 10.2307/2413122] abstract - pdf

Spencer, C.C., J.E. Neigel, and P.L. Leberg. 2000. Experimental evaluation of the usefulness of microsatellite DNA for detecting demographic bottlenecks. Molecular Ecology 9: 1517-1528. [DOI: 10.1046/j.1365-294x.2000.01031.x] abstract

Stetz, J.B., K.C. Kendall, and C. Servheen. 2010. Evaluation of Bear Rub Surveys to Monitor Grizzly Bear Population Trends. Journal of Wildlife Management 74 (in press).

Stith, B.M. 1999. Metapopulation viability analysis of the Florida scrub-jay (Aphelocoma coerulescens): a statewide assessment. Final Report to the Endangered Species Office, US Fish and Wildlife Service, Jacksonville, Florida. Contract No. 1448-40181-98-M324. August 1999.

Stith, B.M., J.W. Fitzpatrick, G.E. Woolfenden, and B. Pranty.1996. Classification and conservation of metapopulations: a case study of the Florida scrub-jay. In: Metapopulations and Wildlife Conservation (ed. McCullough DR), pp. 187–215. Island Press, Washington, D.C./Covelo, California.

Underwood, A.J. 1994. On beyond BACI: sampling designs that might reliably detect environmental disturbances. Ecological Applications 4:3-15. [DOI:10.2307/1942110] abstract - pdf

U.S. Fish and Wildlife Service. 1995. The Florida Panther Recovery Team, South Florida Ecological Services Office.

Wasser, S.K., B. Davenport, E.R. Ramage, K.E. Hunt, M. Parker, C. Clarke, and G. Stenhouse. 2004a. Scat detection doges in wildlife research and management: application to grizzly and black bears in the Yellowhead Ecosystem, Alberta, Canada. Canadian Journal of Zoology 82:475-492. [DOI: 10.1139/z04-020] abstract

Wasser, S. K., C. Mailand, R. Booth, B. Mutayoba, E. Kisamo, B. Clark, and M. Stephens. 2007. Using DNA to track the origin of the largest ivory seizure since the 1989 trade ban. Proceedings of the National Academy of Sciences. 104:4228-4233. [DOI:10.1073/pnas.0609714104 ] abstract - pdf

Wasser, S.K., A.M. Shedlock, K. Comstock, E.A. Ostrander, B. Mutaoba, and M. Stephens. 2004b. Assigning African elephant DNA to geographic region of origin: Applications to the ivory trade. Proceedings of the National Academy of Sciences. 101:14847-14852. [DOI: 10.1073/pnas.0403170101] abstract - pdf

Weir, P. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370. [DOI: unknown] abstract - pdf

White, G.C. 2005. Correcting wildlife counts using detection probabilities. Wildlife Research 32: 211-216. [DOI: 10.1071/WR03123] abstract

White, G. C., and K. P. Burnham. 1999. Program MARK: survival estimation from populations of marked animals. Bird Study Supplement 46:120–138. [DOI: 10.1080/00063659909477239] abstract - pdf - Program MARK

White, G. C., K. P. Burnham, and D. R. Anderson. 2001. Advanced features of Program Mark. Pages 368–377 in R. Field, R. J. Warren, H. Okarma, and P. R. Sievert, editors. Wildlife, land, and people: priorities for the 21st century. Proceedings of the second international wildlife management congress. The Wildlife Society, Bethesda, Maryland, USA. Woods, J. G., D. Paetkau, D. Lewis, B. N. McLellan, M. Proctor, and C. Strobeck. 1999. Genetic tagging of free-ranging black and brown bears. Wildlife Society Bulletin 27:616–627. [ISBN 10: 0933564147 ; 13: 9780933564145] abstract and pdf

Wisely et al. 2004

Woolfenden, G.E., and J.W. Fitzpatrick. 1984. The Florida Scrub Jay - Demography of a Cooperative-Breeding Bird. Princeton University Press, Princeton, New Jersey.