USFWS
Fisheries & Ecological Services
Alaska Region   

 

Conservation Genetics Laboratory
Agency Reports

Reprints, data and further information available upon request

 
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2016

Flannery B, Loges R (2016) Yukon River coho salmon microsatellite baseline. Final Report for Study 14-206, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

2015

Flannery BG, Wenburg JK (2015) Application of mixed-stock analysis for Yukon River chum salmon. Final Report for Study 10-205, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

2014

Flannery BG, Wenburg JK (2014) Application of mixed-stock analysis for Yukon River chum salmon, 2012. Annual Report for Study 10-205, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska (pdf)

Ray J, Sethi SA, Joyce JE, Eiler JH, Evans DM, Vulstek SC (2014) Distribution and habitat use of adult sockeye salmon in the Auke Lake watershed.  Alaska Fisheries Data Series Number 2014-3, U.S. Fish and Wildlife Service, Juneau (pdf)

Tanner TL, Sethi SA (2014) Estimation of Chinook salmon escapement, distribution and run timing in the Togiak River watershed using radio telemetry, Togiak National Wildlife Refuge, Alaska, 2012.  Alaska Fisheries Data Series Number 2014-11, U.S. Fish and Wildlife Service, Anchorage.

2013

Flannery BG, Wenburg JK (2013) Application of mixed-stock analysis for Yukon River chum salmon, 2011. Annual Report for Study 10-205, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Gerken J, Sethi SA (2013) Juvenile coho salmon migration and habitat use in Meadow Creek, Southcentral Alaska, 2011.  Alaska Fisheries Data Series Number 2013-1, U.S. Fish and Wildlife Service, Anchorage. (pdf)

2012

Benolkin E, Sethi SA (2012) Inventory, monitoring, and the efficacy of minnow traps in capturing juvenile coho salmon in the Knik River Basin, Southcentral Alaska, 2011.    Alaska Fisheries Data Series Number 2012-12, U.S. Fish and Wildlife Service, Anchorage. (pdf)

Daum DW, Flannery BG (2012) Distribution and genetic origin of Chinook salmon rearing in nonnatal U.S. tributary streams of the Yukon River, 2008–2010. Alaska Fisheries Data Series Number 2012-10, U.S. Fish and Wildlife Service, Fairbanks. (pdf)

Flannery BG, Wenburg JK (2012) Application of mixed-stock analysis for Yukon River chum salmon, 2010. Annual Report for Study 10-205, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Phillips CT, Wenburg JK, Lewis C, Olsen J (2012) Genetic diversity in the fountain darter Etheostoma fonticola. Final report presented to the Edwards Aquifer Recovery Implementation Program Steering Committee. (pdf)

Tanner TL, Sethi SA (2012) Estimation of Chinook salmon escapement, distribution and run timing in the Togiak River watershed using radio telemetry, Togiak National Wildlife Refuge, Alaska, 2011.  Alaska Fisheries Data Series Number 2012-9, U.S. Fish and Wildlife Service, Anchorage. (pdf)

2011

Daum DW, Flannery BG (2011) Stock composition of age-0 Chinook salmon rearing in nonnatal U.S. tributary streams of the Yukon River. Final Report for Project URE-23N-10, Yukon River Panel Restoration and Enhancement Fund, Whitehorse, Canada. (pdf)

Flannery B, Loges R (2011) Yukon River chum salmon baseline augmentation. Final Report for Study 45753, Alaska Sustainable Salmon Fund, Juneau. (pdf)

Flannery BG, Maschmann GF, Wenburg JK (2011) Application of mixed-stock analysis for Yukon River fall chum salmon, 2009. Annual Report for Study 06-205, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Olsen JB, Hard JJ, Harper K, Miller SJ, Wenburg JK (2011) Heritability of traits in wild Chinook salmon. Final Report for study 45493, Arctic Yukon Kuskokwim Sustainable Salmon Initiative. (pdf)

Tanner TL, Sethi SA (2011) Estimation of Chinook salmon escapement, distribution and run timing in the Togiak River watershed using radio telemetry, Togiak National Wildlife Refuge, Alaska, 2010.  Alaska Fisheries Data Series Number 2011-9, U.S. Fish and Wildlife Service, Anchorage. (pdf)

2010

Flannery BG, Holder RR, Maschmann GF, Kretschmer EJ, Wenburg JK (2010) Application of mixed-stock analysis for Yukon River fall chum salmon, 2008. Annual Report for Study 06-205, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Flannery BG, Wenburg JK, Evenson DE (2010) Yukon River summer chum salmon mixed-stock analysis, 2009. Final Report for Project RM-14-09, Yukon River Panel Research and Management Fund, U.S. Fish and Wildlife Service, Fairbanks, Alaska. (pdf)

Gates KS, Boersma JK, Olsen JB (2010) Characteristics of spawning adult steelhead in Crooked and Nikolai Creeks, Kenai Peninsula, Alaska, 2004-2009. Alaska Fisheries Data Series Report No. 2010-9. (pdf - 676kb)

2009

Daum DW, Flannery BG (2009) Canadian-origin Chinook salmon rearing in non-natal U.S. tributary streams of the Yukon River, 2006–2007. Alaska Fisheries Technical Report Number 102, U.S. Fish and Wildlife Service, Fairbanks. (pdf - 1mb)

Flannery BG, Anderson CA, Lewis CJ, Wenburg JK (2009) Genetic investigation of temporal divergence in rainbow smelt from the Togiak River. Alaska Fisheries Data Series Number 2009-15, U.S. Fish and Wildlife Service, Anchorage. (pdf)

Flannery BG, Wenburg JK, Lewis CJ, Norcross BL, Spangler RE (2009) Genetic population structure of Alaska eulachon. Alaska Fisheries Technical Report Number 106, U.S. Fish and Wildlife Service, Anchorage. (pdf - 706kb)

Flannery BG, Holder RR, Maschmann GF, Kretschmer EJ, Wenburg JK (2009) Application of mixed-stock analysis for Yukon River fall chum salmon, 2007. Annual Report for Study 06-205, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Flannery BG, Wenburg JK, Evenson DE (2009) Yukon River summer chum salmon mixed-stock analysis, 2008. Final Report for Project RM-14-08, Yukon River Panel Research and Management Fund, U.S. Fish and Wildlife Service, Fairbanks, Alaska. (pdf)

Olsen JB, Crane PA, Dunmall K, Flannery BG, Templin WD, Wenburg JK (2009) Landscape genetics of AYK salmon populations. Final report for study 45490, Arctic Yukon Kuskokwim Sustainable Salmon Initiative. (pdf)

2008

Flannery BG, Holder RR, Maschmann GF, Kretschmer EJ, and Wenburg JK (2008) Application of mixed-stock analysis for Yukon River fall chum salmon, 2006. Alaska Fisheries Data Series Number 2008-5, U.S. Fish and Wildlife Service, Anchorage. (pdf)

2007

Crane P, Molyneaux D, Lewis C, and Wenburg J (2007) Genetic variation among coho salmon populations from the Kuskokwim region and application to stock-specific harvest estimation. Alaska Fisheries Technical Report Number 96, U.S. Fish and Wildlife Service, Anchorage (pdf-517kb)

Flannery BG, Beacham TD, Holder RR, Kretschmer EJ, and Wenburg JK (2007) Stock structure and mixed-stock analysis of Yukon River chum salmon. Alaska Fisheries Technical Report Number 97, U.S. Fish and Wildlife Service, Anchorage. (pdf - 608kb)

Olsen JB, Schlei O, Brown R, Miller SJ, Harper K, Wenburg JK (2007) Genetic Species Markers and Population Structure in Alaskan Coregonid Fishes. Final Report for Study 05-702, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska.(pdf)

2006

Flannery B, Beacham T, Wetklo M, Smith C, Templin B, Antonovich A, Seeb L, Miller S, Schlei O, Wenburg JK (2006) Run timing, migratory patterns, and harvest information of Chinook salmon stocks within the Yukon River. Alaska Fisheries Technical Report 92, U.S. Fish and Wildlife Service, Anchorage. (pdf - 2696kb)

Flannery B, Luiten L, Wenburg JK (2006) Yukon River coho salmon genetics. Alaska Fisheries Technical Report 93, U.S. Fish and Wildlife Service, Anchorage. (pdf - 1066kb )

Olsen JB, Beacham TD, Le KD, Wetklo M, Luiten LD, Kretschmer EJ, Wenburg JK, Lean CF, Dunmall KM, Crane PA (2006) Genetic variation in Norton Sound chum salmon populations. Final report for study 45081, Arctic Yukon Kuskokwim Sustainable Salmon Initiative. (pdf)

2005

Bilby RE, Bisson PA, Coutant CC, Goodman D, Hanna S, Huntly N, Loudenslager EJ, McDonald L, Philipp DP, Riddell B, Olsen JB, Williams R (2005) Viability of ESUs containing multiple types of populations. A report from the Independent Scientific Advisory Board to the Northwest Power and Conservation Council, Columbia River Basin Indian Tribes and NOAA fisheries. http://www.nwcouncil.org/library/isab/isab2005-2.htm

Candy JR, Flannery BG, Beacham TD (2005) Building a collaborative chum salmon microsatellite baseline for Yukon River genetics stock identification. Proceedings of the 22d Pink and Chum Workshop 13 pp. (pdf - 1.4mb)

Crane P, DeCicco F, Spearman B, Wenburg JK (2005) Genetic diversity of Dolly Varden populations in Norton and Kotzebue Sounds. Alaska Fisheries Technical Report 80, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Crane P, Viavant T, Wenburg JK (2005) Overwintering patterns of Dolly Varden Salvelinus malma in the Sagavanirktok River in the Alaskan North Slope inferred using mixed-stock analysis. Alaska Fisheries Technical Report 84, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Greenwald GM, Campton DE (2005) Genetic influence of hatchery-origin fish to natural populations of rainbow trout in the Santa Ynez River, California. A synopsis and supplemental evaluation of: Nielsen JL, Zimmerman CE, Olsen JB, Wiacek TC, Kretschmer EJ, Greenwald GM, Wenburg JK (2003). California/Nevada Operations Office (CNO), U.S. Fish and Wildlife Service, Sacramento, California 20 pp. (pdf - 4905kb)

Hey J, Brannon E, Campton D, Doyle R, Fleming I, Kinnison M, Lande R, Olsen JB, Philipp D, Travis J, Wood C, Doremus H, Ford M (2005) Considering life history, behavioral, and ecological complexity in defining conservation units for Pacific salmon. An independent panel report requested by NOAA fisheries. (pdf)

Moncrieff CF, Crane PA, Wiswar D (2005) Phenotypic characterization of Chinook salmon in the Yukon River subsistence harvest. U.S. Fish and Wildlife Service, Office of Subsistence Management, Fisheries Resource Monitoring Program, 2005 Final Report (Study 03-015), Yukon River Drainage Fisheries Association, Anchorage, Alaska. (pdf - 1836kb)

Olsen JB, Miller SJ, Harper K, Wenburg JK (2005) Effective population size of Chinook salmon in Yukon and Kuskokwim River tributaries. Arctic Yukon Kuskokwim Sustainable Salmon Initiative, Final Report for Study 45240. (pdf)

2004

Crane P, Molyneaux D, Miller S, Harper K, Wenburg JK (2004) Genetic variation among coho salmon populations from the Kuskokwim River region and application to stock-specific harvest estimation. Final Report for Study 03-041, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Olsen JB, Miller SJ, Harper K, Nagler JJ, Van Hatten K, Whitton K, Wenburg JK (2004) Sex ratios of juvenile and adult chinook salmon in the Kuskokwim and Yukon Rivers. Final Report for Study 02-097, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Olsen JB, Miller SJ, Spearman WJ, Wenburg JK (2004) Patterns of genetic diversity in Alaskan coho salmon. North Pacific Anadromous Fish Commission, Technical Report 5, 55-57.

Wuttig KG, Fleming DF, Olsen JB (2004) Stock status and population biology of the Copper River steelhead. Alaska Department of Fish and Game Fishery Data Series No. 04-18, 59p.

2003

Crane PA, Lisac M, Spearman B, Kretschmer E, Lewis C, Miller S, Wenburg JK (2003) Development and application of microsatellites to population structure and mixed-stock analyses of Dolly Varden from the Togiak River drainage. Final Report for Study 00-011, Fisheries Resource Monitoring Program, Office of Subsistence Management, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Nielsen JL, Zimmerman CE, Olsen JB, Wiacek TC, Kretschmer EJ, Greenwald GM, Wenburg JK (2003) Population genetic structure of Santa Ynez rainbow trout – 2001: based on microsatellite and mtDNA analyses. Final revised report submitted to Mary Ellen Mueller, Fisheries Supervisor, USFWS, California/Nevada Operations Office, November 11, 2003. (pdf)

Urawa S, Seki J, Kawana M, Saito T, Crane P, Seeb L, Fukuwaka M, Rogatnykh A, Akinicheva E (2003) Origins of juvenile chum salmon caught in the Okhotsk Sea during the fall of 2000. (NPAFC Doc. 721) National Salmon Resources Center, Toyohira-ku, Sapporo 062-0922, Japan 9 p.

2002

Kondzela CM, Crane PA, Urawa S, Varnavskaya NV, Efremov V, Luan X, Templin WB, Hayashizaki K, Wilmot RL, Seeb LW (2002) Development of a comprehensive allozyme baseline for Pacific Rim chum salmon. (NPAFC Doc. 629) Alaska Department of Fish and Game, 333 Raspberry Road, Anchorage, Alaska, USA 99518.

2001

Crane PA, Kondzela CM, Seeb LW (2001) History and use of allozyme baselines for Pacific Rim chum salmon. (NPAFC Doc. 561) Alaska Department of Fish and Game, 333 Raspberry Road, Anchorage, Alaska.

Crane PA, Spearman WJ, Seeb LW (2001) Yukon River chum salmon: report for genetic stock identification studies, 1992-1997. Regional Information Report No. 5J01-08, Alaska Department of Fish and Game, Anchorage, Alaska.

2000

Crane PA, Seeb LW (2000) Genetic analysis of chum salmon harvested in the South Peninsula, post June fishery, 1996-1997. Regional Information Report No. 5J00-05, Alaska Department of Fish and Game, Anchorage, Alaska.

Crane PA, Templin WD, Eggers DM, Seeb LW (2000) Genetic stock identification of Southeast Alaska chinook salmon fishery catches, Final Report to the U.S. Chinook Technical Committee, U.S. Letter of Agreement Award No. NA87FPO408. Regional Information Report No. 5J00-01, Alaska Department of Fish and Game, Anchorage, Alaska.

1999

Buchholz W, Miller SJ, Spearman WJ (1999) Summary of PCR primers for salmonid genetic studies. Alaska Fisheries Progress Report Number 99-1, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf - 1752kb)

Flannery B, Spearman WJ (1999) Genetic baseline collections summary. Alaska Fisheries Data Series Number 99-4, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Krueger CC, Chatto T, Miller SJ, Spearman WJ (1999) Mitochondrial DNA variation in steelhead trout (Oncorhynchus mykiss): comparison of collections from the Kodiak National Wildlife Refuge, Alaska. Alaska Fisheries Technical Report Number 54, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf - 1290kb)

Krueger CC, Lisac MJ, Miller SJ, Spearman WJ (1999) Genetic differentiation of rainbow trout (Oncorhynchus mykiss) in the Togiak National Wildllife Refuge, Alaska. Alaska Fisheries Technical Report Number 55, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf - 1146kb)

Olsen JB, Bentzen P (1999) Development and testing of a semi-automated microsatellite based genotyping system for kinship analysis of chinook salmon. Report of the University of Washington pursuant to National Oceanic and Atmospheric Administration Award Number NA76FD0299. (pdf - 927kb)

Spearman WJ, Miller SJ, Cronin MA, Palmer D, Krueger CC (1999) Genetic differentiation of rainbow trout (Oncorhynchus mykiss) in the Kenai River, Alaska. Alaska Fisheries Technical Report Number 51, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf - 933kb)

Teel DJ, Crane PA, Guthrie CM, Marshall AR, VanDoornik DM, Templin WD, Varnavskaya NV, Seeb LW (1999) Comprehensive allozyme database discriminates chinook salmon around the Pacific Rim. (NPAFC document 440) Division of Commercial Fisheries, Alaska Department of Fish and Game, 333 Raspberry Road, Anchorage, Alaska 25p.

Templin WL, Seeb LW, Crane P, Seeb J (1999) Genetic analysis of sockeye salmon populations from the Chignik watershed. Regional Information Report No. 5J99-08, Alaska Department of Fish and Game, Commercial Fisheries Division, Anchorage, Alaska.

1998

Everett RJ, Wilmot RL, Krueger CC (1998) Population genetic structure of Dolly Varden char from Beaufort Sea drainages of northern Alaska and Canada. Part I in Genetics Investigations of Dolly Varden Char (Salvelinus malma) of the North Slope of Alaska. Alaska Fisheries Technical Report Number 43, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf - 754kb)

Krueger CC, Wilmot RL, Everett RJ (1998) Stock origins of Dolly Varden collected from Beaufort Sea coastal sites of Arctic Alaska and Canada. Part II in Genetics Investigations of Dolly Varden Char (Salvelinus malma) of the North Slope of Alaska. Alaska Fisheries Technical Report Number 43, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf - 754kb)

Miller SJ, Underwood T, Spearman WJ (1998) Genetic stock structure of inconnu (Stenodus leucichthys) from the Selawik and Kobuk Rivers, Alaska using PCR and RFLP analyses. Alaska Fisheries Technical Report Number 48, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

1997

Seeb LW, Crane PA, Debevec EM (1997) Genetic analysis of chum salmon harvested in the South Unimak and Shumagin Islands June fisheries, 1993-1996. Regional Information Report No. 5J97-17, Alaska Department of Fish and Game, Anchorage, Alaska.

Spearman WJ, Miller SJ (1997) Genetic stock identification of chum salmon (Oncorhynchus keta) from the Yukon River District 5 subsistence fishery. Alaska Fisheries Technical Report Number 40, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf)

Subcommittee on Stock Identification, (Authors from Alaska Department of Fish and Game, Canada Department of Fisheries and Oceans, National Marine Fisheries Service, U.S. Fish and Wildlife Service) (1997) Review of stock identification studies on the Yukon River. The United States/Canada Yukon River Joint Technical Committee. (pdf - 1712kb)

1996

Crane PA, Templin WD, Seeb LW (1996) Genetic stock identification of Alaska chinook salmon. Final report of the Alaska Department of Fish and Game pursuant to National Oceanic and Atmospheric Administration Awards No. NA46FD0356. Regional Information Report No. 5J96-17, Alaska Department of Fish and Game, Anchorage, Alaska.

1995

Seeb LW, Crane PA (1995) Mixed stock analysis of Pacific Rim chum salmon in the 1993 and 1994 South Alaska Peninsula June fisheries using allozyme and mitochondrial DNA data. (NPAFC Doc. 165) Alaska Department of Fish and Game, Anchorage, Alaska.

Seeb LW, Crane PA, Gates RB (1995) Progress report of genetic studies of Pacific Rim chum salmon and preliminary analysis of the 1993 and 1994 South Unimak June fisheries. Regional Information Report No. 5J95-07, Alaska Department of Fish and Game, 333 Raspberry Road, Anchorage, Alaska.

Seeb LW, Crane PA, Templin WD (1995) Genetic stock identification of Alaska chinook salmon: a report of the Alaska Department of Fish and Game pursuant to National Oceanic and Atmospheric Administration Award No. NA26FD0157-01. Regional Information Report No. 5J95-18, Alaska Department of Fish and Game, Anchorage, Alaska.

1994

Crane PA, Seeb LW, Gates RB (1994) Yukon River chum salmon: progress report for genetic stock identification studies July 1, 1992 - June 30, 1994. Regional Information Report No. 5J94-19, Alaska Department of Fish and Game, Anchorage, Alaska.

Olsen JB (1994) Development of the pink salmon enhancement program in Prince William Sound, Alaska. Pages 57-68 in: W.W. Smoker, editor. Proceedings of the Sixteenth North East Pacific Pink and Chum Salmon Workshop, February 1993, Alaska Sea Grant. (pdf)

1992

Wilmot RL, Everett RJ, Spearman WJ, Baccus R (1992) Genetic stock identification of Yukon River chum and chinook salmon 1987 to 1990. Progress Report, U.S. Fish and Wildlife Service, Anchorage, Alaska. (pdf - 2523kb)

 

Last updated: August 2016